NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315327_10458401

Scaffold Ga0315327_10458401


Overview

Basic Information
Taxon OID3300032032 Open in IMG/M
Scaffold IDGa0315327_10458401 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 32315
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)795
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020814Metagenome / Metatranscriptome222Y
F059885Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0315327_104584011F020814GAGMGRSKGNLGHRVPTYIGNPPNKEIYPEWWEDEENLMRLHPSYPQRKALIRRKYEQKK
Ga0315327_104584013F059885GGAMVRMALSEFQERMTIAQDMLREAYPDNPAVEQICEAISIASQVVVHMSIPFLAIVEEKLDIQN

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