NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315272_10408647

Scaffold Ga0315272_10408647


Overview

Basic Information
Taxon OID3300032018 Open in IMG/M
Scaffold IDGa0315272_10408647 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_middle
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)670
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5107Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001259Metagenome / Metatranscriptome735Y
F013755Metagenome / Metatranscriptome268Y
F064717Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0315272_104086471F064717N/AMSILKQLGLTKESMEKMLGPVTAFKDPDPKIPRRWEAVPEEIKEAILKEHSTFTCRELGKKYGISSSCAWNIRNKKNKQTTKQ
Ga0315272_104086472F001259AGGAGGVKDSPAFIYVHAFNGLVRVESLDTAKHIDGNPEWNHVATINAHVILESILRASVKDRNLIIKHLLT
Ga0315272_104086473F013755N/ATPHNIAELGMLCRRLERKLAATRKYLSEVSERARKLESENDAMRADLLLWNEKEVKL

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