Scaffold Ga0315272_10408647

Overview

Basic Information

• Taxon OID: 3300032018
• Scaffold ID: Ga0315272_10408647
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_middle
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 670
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5107
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F013755	Metagenome / Metatranscriptome	268	Y
F064717	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315272_104086471	F064717	N/A	MSILKQLGLTKESMEKMLGPVTAFKDPDPKIPRRWEAVPEEIKEAILKEHSTFTCRELGKKYGISSSCAWNIRNKKNKQTTKQ
Ga0315272_104086472	F001259	AGGAGG	VKDSPAFIYVHAFNGLVRVESLDTAKHIDGNPEWNHVATINAHVILESILRASVKDRNLIIKHLLT
Ga0315272_104086473	F013755	N/A	TPHNIAELGMLCRRLERKLAATRKYLSEVSERARKLESENDAMRADLLLWNEKEVKL