Scaffold Ga0315272_10036773

Overview

Basic Information

• Taxon OID: 3300032018
• Scaffold ID: Ga0315272_10036773
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_middle
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2214
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5107
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022846	Metagenome	212	Y
F036167	Metagenome / Metatranscriptome	170	N
F047595	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315272_100367732	F036167	AGGAGG	MRRFTITDIMEGNGQPHPAFTHTATYPVLDVLLPSAGNLPGFLVADDQGRFHLIRMDHCRMGKIEAF
Ga0315272_100367733	F022846	GAGG	MPIAAPEELGRELSDLAFGIIEQNWLAEHIGKAVDVKRLDPMQASAAEWELTYLILFAITSGCGTCAATDRDRTTAALKAFHSTFLKQIGEQVGQDIVNAHEKNLVPRYRLYGQTLEGEDTTYPYKTRYQRLGEAAAIQLLGKPIEDPQTADIFRETIKVIFTEVREAVIKVMRHPQVAPVQGEA
Ga0315272_100367734	F047595	AGGAG	MDFDIGSNQYRNATNGIEIDGMAQLSFEHNRRYNEMMLRGLIFDQRGALVAQIAENSLCMNIQGEFEMQSEYPVVKLLRRETEDVLLEVKFLDDNRVQIHKAKLYSGKGTPFEITPTLWKLKDDTHSGENV