NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315272_10011023

Scaffold Ga0315272_10011023


Overview

Basic Information
Taxon OID3300032018 Open in IMG/M
Scaffold IDGa0315272_10011023 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_middle
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4170
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5107Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F102362Metagenome101N
F102365Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0315272_100110231F102362N/AMNTTTPPATRPLNDAAIATTQRAVSQTLGGLLSPLEARLAKGFQSHRDKPLVRPFCNIFERHLKVELDQQNFIWSDTLRLNARLVQAIEAAAISEDEKNEAVFWLVLFYTSYFALGYQTRCLKAPAEQQPLLNLAQTQAVLHHMRSLGIQQPANAPHWEQNGYVFKALIALAPGPKIAE
Ga0315272_100110236F102365AGAAGMLKWLFRKSAAAPPENQGEVRRRLQAAQRLVRQQKESKDAPEIPKQGPPGNSTREILPSIEPDAAISYRLPSPPPARSTLAAALESILQGRRVNPELFTQLYRGGFVFKDPHGRWAITEMGKGLIERNKLFLPDRCLVAGVECACGWHKQEIRRLN

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