Scaffold Ga0315272_10011023

Overview

Basic Information

• Taxon OID: 3300032018
• Scaffold ID: Ga0315272_10011023
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_middle
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4170
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5107
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F102362	Metagenome	101	N
F102365	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315272_100110231	F102362	N/A	MNTTTPPATRPLNDAAIATTQRAVSQTLGGLLSPLEARLAKGFQSHRDKPLVRPFCNIFERHLKVELDQQNFIWSDTLRLNARLVQAIEAAAISEDEKNEAVFWLVLFYTSYFALGYQTRCLKAPAEQQPLLNLAQTQAVLHHMRSLGIQQPANAPHWEQNGYVFKALIALAPGPKIAE
Ga0315272_100110236	F102365	AGAAG	MLKWLFRKSAAAPPENQGEVRRRLQAAQRLVRQQKESKDAPEIPKQGPPGNSTREILPSIEPDAAISYRLPSPPPARSTLAAALESILQGRRVNPELFTQLYRGGFVFKDPHGRWAITEMGKGLIERNKLFLPDRCLVAGVECACGWHKQEIRRLN