Scaffold Ga0315272_10008173

Overview

Basic Information

• Taxon OID: 3300032018
• Scaffold ID: Ga0315272_10008173
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_middle
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4882
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5107
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016936	Metagenome / Metatranscriptome	243	Y
F024061	Metagenome / Metatranscriptome	207	N
F042326	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315272_1000817310	F042326	AGGA	MISDALTVAAIFASGALIGYIIGAARGRKLGRDEQWVDCFLAGEAREKLRREKDGRFKTKTK
Ga0315272_100081733	F016936	AGG	MNLELIHAELIRIREALEARPYASGAPAAKPASSFPKSDEIPMPAEIIDDAGNVQVHFGKNKGVVLSSLGDRSVAWYAQEPEPRIGNNGKPFPPRPEDVLLRNAARTLIHQKRGTLPSAAVPTAPVAAIDDGDVSF
Ga0315272_100081736	F024061	AGG	MNAGEIKNQAVINNATEQFRSLLETHFIAIARAAEESFVEEENQTEPKAKATFAIEWDALSLAPKVVVKIGWSVRYKDETEAMVDPLQSKLGLVEEAK