Scaffold Ga0315272_10005177

Overview

Basic Information

• Taxon OID: 3300032018
• Scaffold ID: Ga0315272_10005177
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_middle
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6189
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5107
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011740	Metagenome	287	N
F017799	Metagenome	238	N
F042326	Metagenome	158	Y
F059946	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315272_1000517714	F017799	AGGCGG	METTNTNDQRELEALRFSSRAARAITTLEVQRKAIGREYGERIKKIKALILILQQRESLGQMGIEGIDAVEITPELKKLIYNPVGDLS
Ga0315272_1000517715	F011740	N/A	VSSITTADWVTNCVTTYDAARGTAQLSCEIMERLVEMHEIKIGRAADFCRRLGTLSDMSPTMFLITLRLGSGNVDAVRRSFSEMAEHRGLTRQALHFEWSQEVDKVRMVFPELAQLMADYRQSTDEPERGDSEEGR
Ga0315272_100051773	F042326	AGGA	MISDALTVAAIFASGGLIGYIIGSARGRKRGRDEQWVECFLAGEKREKARREADGRFKSKTK
Ga0315272_100051774	F059946	N/A	MNKRKSDEAKRIQCDTMLAQFMPVKTIAAALRMSRGTVSERAKRAGMTRHYITEAEVKALFKNRIGGVAK