NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315272_10004647

Scaffold Ga0315272_10004647


Overview

Basic Information
Taxon OID3300032018 Open in IMG/M
Scaffold IDGa0315272_10004647 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_middle
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6559
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5107Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004740Metagenome425Y
F019100Metagenome / Metatranscriptome231Y

Sequences

Protein IDFamilyRBSSequence
Ga0315272_100046472F004740N/AMLDNPFLGLDSATLTALKTKTIDAIQAVLLNQSYSLNGKSVSRADLNALNNMLGNLQDALTNAAGTSTDTTFVSFTGN
Ga0315272_100046475F019100AGGALSEKENVPQTQQAEQVIDPAKIRRANAGNILKKLRAGRTLSAQERNALEEFQAENSGGWVKDTTTLAKELGLSRQAIYDARNRFPDAPKKHEDGRRENLAAWQQFCAENVIGKDVATKNLAELKAELMREQIRLARSKNEREAGDVIDREVVEAMLVTLGQKLNLLLRLKLEVELGPRGVGMNAAELNVEGGVILGEIREVINANIATFEGEALDRSRGSEA
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