NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315272_10001332

Scaffold Ga0315272_10001332


Overview

Basic Information
Taxon OID3300032018 Open in IMG/M
Scaffold IDGa0315272_10001332 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_middle
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12295
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (40.91%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5107Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000273Metagenome / Metatranscriptome1401Y
F003579Metagenome / Metatranscriptome478Y
F009125Metagenome322Y
F013396Metagenome271N
F016125Metagenome249N
F063471Metagenome / Metatranscriptome129N
F100667Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0315272_1000133212F063471N/AMYTNSAAIFRGDIAGVVEQAKDYEAGLIGVQAMPILDVPVRAGQYPSFVLKEGQLLKSDVKSRAAYSAYARGTRAFNQDTYTALEYGYEEAVDDTVTLDVARFFDAEVIAAKLAKRKLLLAHELRVAAKLFDNTTFTATNSGTAYTTANLATFDVGADVQEATDRLLAKGESVTNLSVIIPYPVWTRIRASTKFQNRLRGAGISSDTILNASQQAAAEVFGVAQVLIGRASYDTAPEGVAFAAGNVWANTFIWVGSVTQASAGFFGGGAGFTLNWSEYGPAIGVSTYREEAIKSNIVRASQFTAEKVVNANAGQLITTQYS
Ga0315272_1000133215F009125GGAGMNADNIRATLTAATPAAAMISLSQVNEVAALVGTLLGIAFLLWRWRREAQKKD
Ga0315272_1000133216F000273GAGGMSEEASKHALIEKAAFAVLPILFSCVVYLMSSLASISHEVTVLRQQVSLVVTSDNKQATNTGAELAREKLRQDLEKEIQHNRDMILENRTSIAVITERIGALKK
Ga0315272_1000133219F013396N/AVTLRRSLLLAALALGLVVVLGLALRSERVLTAGLPLRIIVASEAEAWKLAGPSAVVVLGTGSMVPYIPAAPKGADPLRTVCALAVLVPDARYADIKAGALCIYVPVWAGRNVMHQAAQIDAGGWIMTGLGNKSYETTERVTAANFVGIVSRTYIWP
Ga0315272_1000133221F003579N/AMTIPIAPYTMGSPAAPKVGVLFEVRYINYTDRTAVADCHLLDAEGVEIMPVGLVPATAEQCAAWTDDAAFAAVLAVNAGFELVSAE
Ga0315272_100013328F100667AGGMISIFSDTSKLEYALARLADAAKVDTGLVIKQEGAYIAKVMMQIIPPTGDKTKNGKTVPTVTGGTIKLNKASGLSINAKEQGENAILGDLFGGNKMAKEFQIGLFQRIGNSTEVPPRGGQNETMGVSLGNEGGKKIRIYRKFWLENASIEQMKSFHHANRNNRGRRKQVTRSAIGRFKVQDQMWISNESADAYLAYVQKSVGLAKAGFAAAAMLGGVRVPSWIRKHMAKAGNAQGHFGVNPFFIARTTGNKIPNLQRVVDGALKIRYKITISKFRAVLANRAVNLGFTRVVGGMPIKSDA
Ga0315272_100013329F016125AGGCGGMAAVRDFDPTQINSDFSAILAQAGVAFTYQGVSVTGIWAAASNAFADFEDQRREDSKFTVFLLTSSVSATPKVTQTLSRASVTYFIERVTLDAEGAGCEISVAKVI

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