Scaffold Ga0315272_10000460

Overview

Basic Information

• Taxon OID: 3300032018
• Scaffold ID: Ga0315272_10000460
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_middle
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20389
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (45.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5107
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001165	Metagenome / Metatranscriptome	760	Y
F003687	Metagenome / Metatranscriptome	473	Y
F029405	Metagenome / Metatranscriptome	188	Y
F055681	Metagenome / Metatranscriptome	138	N
F091979	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315272_1000046024	F003687	AGGA	MSPSSVEHLLTQQARLLARRETPVIDQELENLRQSALEVFFQWQDGLCEFQDLTPFVAILEKKVDLNQSLLKWEQEHITD
Ga0315272_1000046031	F029405	N/A	MQSTSDFIDEQRNADMLDALADIAYEQEQAMRESEQSDWDGIDEISDAERNACDHYNERYVITTHD
Ga0315272_1000046033	F091979	N/A	MLIAGRYSISNSPFLQGWQQEYMKAHGSMPSQDKVISFLESIVNNESIPVIKKQADIRLLNQMQKFAP
Ga0315272_1000046035	F001165	N/A	MPLMSPLNDAPKPRIPDAIDKQRLQAMQLVAKMKESADKYGVGFVGGFISPNGQKFMMTNMNEDDTNALLPDDLK
Ga0315272_1000046039	F055681	N/A	MIGFSFEFKRWYVVVRGPKGTVYLAFGFAKQMPVFTPAKTMTLQEYIDDYNDAIVFTNESGEELMRI