Scaffold Ga0315272_10000176

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315272_10000176

Scaffold Ga0315272_10000176

Overview

Basic Information
Taxon OID	3300032018 Open in IMG/M
Scaffold ID	Ga0315272_10000176 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_middle
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	30017
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (16.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5107	Long. (^o)	-110.3566	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014975	Metagenome / Metatranscriptome	258	Y
F047061	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315272_1000017637	F047061	N/A	MKAINDWMVVKDESLELLEEEIKENIEWLSTTEDDEVECIGIENLEGILTKFFHRKISLTLG
Ga0315272_100001766	F014975	N/A	MEKVFNQFKNMLIVHPKYKGYVCGYNDSHVIIAIESTSKDFFRKMANPYIMEEYKDSKYRYAFEDERELIKQSQDGEYKKASSKN

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