NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315272_10000072

Scaffold Ga0315272_10000072


Overview

Basic Information
Taxon OID3300032018 Open in IMG/M
Scaffold IDGa0315272_10000072 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_middle
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40058
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (38.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5107Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013155Metagenome / Metatranscriptome274Y
F038745Metagenome / Metatranscriptome165Y
F051572Metagenome / Metatranscriptome144N
F075483Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0315272_1000007215F051572GAGMSSGRVHVGPFAEVWTFADVVLEGGCKKSPQFLNTRLELCVLAALIKAAPAGAMVRLRPELARRLVEELAAAAGRDRERVRNALLKKAGEVLTQLRRELGDKTPAEALLAKLAELFLKELEA
Ga0315272_1000007216F038745N/AVDGRRFIPHLSRRFSMDRAVAVVCSELMQISLAFSAYYPLCSGGWPCVFAETVERLIRRAASARGAEELVEVMEGRVKLEELSLPDPALEVLAEELGPEPPWLDALAASFFRLYLGLGRRRRVDGRDLSFALCLWAQKKRREDPRNPLWRAAELEPDRLYTEEEAREALNIEERLFRRLWRRALTFHRGEKAYGFQLILAALSLMAVPPRSV
Ga0315272_1000007229F013155AGGMELYQAIVVTIALANLAVTVWLLRLLFPVWRELRRIVFALDHYDFDKLTKQFLNGEKPLAETIDMKVSEKKEEGYRELTVTRVYKKPLDPREIQENFVRQMAERLQ
Ga0315272_1000007230F075483GAGGMIELLVVQAITNLALAFLVIKLRRELWPMIATAGQPYASFWIRSVDVLVLAAPQFEAAKSVIRVRKLFTEELYLRYRFRVYDVAMHPSSRVFYKEWRAWLSGDDRYRCEVEKPRGLARLYTKAIDVFCKEKEPPKEVVIAPSRWRKRRYKRWTKPRPRRERATLYDLVEKFEKLK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.