NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310899_10042939

Scaffold Ga0310899_10042939


Overview

Basic Information
Taxon OID3300032017 Open in IMG/M
Scaffold IDGa0310899_10042939 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1615
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F095852Metagenome105Y
F103458Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0310899_100429391F095852AGGMNQRTLRIPGTLKHTSDEQTDVALQEKAREYADRHPGVRYLADVLRALHAPGALMRSAKGFYGAFTPREMMEALAQRPDLRVKTVKAITGGAPTLLRRLPPEALASQIDLLVIDDLPEAERSVRAEADRALTVHDLYMKYLDPVDLATYLPAQSIWAYESQDNWWKWEPTAGTRA
Ga0310899_100429392F103458GAGVTPVVLAVVAPAILTWGGLRPTQLVEKKVDAGTFAITVGGRRAGRETFEIVQTGLSLEVRTRSTIDLPAGQTTIRAALRIDPDWKPRSGTFDTIMRGGTTRAALQQRGSAVESVTMMPGRRASFTRPPAEPDLYLGANIIAHLSPLCREANTKDKTLTVFPAAPLKIVSSSVRRYPLTKLGAPELELTEVVADLAQSMRIKVACDGTKLVAAYLSSGRLTAVRASYEELASALESRPRGKPILSSTLKELPRKVSVGNGEAALACTLLVPATHAEIERSRPRPSASRPGASADAPGEHSFRPP
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