NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310906_10330387

Scaffold Ga0310906_10330387


Overview

Basic Information
Taxon OID3300032013 Open in IMG/M
Scaffold IDGa0310906_10330387 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)985
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011858Metagenome / Metatranscriptome286Y
F025528Metagenome / Metatranscriptome201Y
F077471Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0310906_103303871F025528GGAGGMAVTVQMQFESAVTETYQNAFVGSSIENGATILQCDLRQLDLQREL
Ga0310906_103303872F011858AGAAGGMAFVFHIHTSPSCETTHSTSCASVEGADWDHSCFRIESGRNRGKYACVHRNPEGLSHEDEIFISDLISLNVFARDQGGYRKENRA
Ga0310906_103303873F077471N/ACKGGQVSERRHPTRIEQSVVLVNTIVDRIFSDHKSIKIYGLKKIHESYEVWVKYEGQMITVQSLSREIILPCTDPDEDTAMKFQSFIERCIRQGMKVLTPDVS
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