NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310906_10008583

Scaffold Ga0310906_10008583


Overview

Basic Information
Taxon OID3300032013 Open in IMG/M
Scaffold IDGa0310906_10008583 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3775
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005830Metagenome / Metatranscriptome389Y
F026078Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0310906_100085832F005830AGGAGMKKQWEPERSRVEHANDARITFTIALHGDHAWEMLLEDSKNYHSISHGWATDNPQDWEAIIAPALCRLFPDDRLRLATKASIDAPGGSCAGVALYDPPLCSPATRAEDNLSDGWRKQAIA
Ga0310906_100085833F026078AGGAGMRTFLGLVIAVVVAATIWWTFPIQAKQQFDHDSIDPLAMTGTVTNLLPEVHYDHGFVFPEQQ

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