NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310902_10024759

Scaffold Ga0310902_10024759


Overview

Basic Information
Taxon OID3300032012 Open in IMG/M
Scaffold IDGa0310902_10024759 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2686
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073749Metagenome / Metatranscriptome120N
F075069Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0310902_100247591F075069N/ARARGTPQRKTHDMRRYDIFEERAIKAHLTIPDEGPPTWDFPPEDVGGAWMDDALRDGIVATILAAPGEAAWFYGDLTIEPQRPAEGDLDSLGSTVL
Ga0310902_100247592F073749AGGAGGMTFDDYQACLNALFAADRQLNLVQARFAASGAAGSTLDAFQLLRLAMVQCFERLEQHYARQYPDHALADVCALLEAQRAPEGQRAGTLVWQDVLRRPAAETLLHDPARHDR
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