NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315316_10624390

Scaffold Ga0315316_10624390


Overview

Basic Information
Taxon OID3300032011 Open in IMG/M
Scaffold IDGa0315316_10624390 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)899
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030873Metagenome184N
F068116Metagenome125N

Sequences

Protein IDFamilyRBSSequence
Ga0315316_106243903F030873GAGGMLFKRNDKIAIVVKPKTHNGEVNEKDYFTRYGEMRKDSKFLVSKNIITFWDTQADNFRSFNLSDVVSITNLSRTPLEINKKEQEKKEREKMKGYNCLSCKARLTMDYRNKFNDNYCGDC
Ga0315316_106243904F068116AGGMRTQISDYELMTFFNNLKEIIQAQKELNHVLAKRITNLENRLEKKESEVIDVV

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