NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315316_10612185

Scaffold Ga0315316_10612185


Overview

Basic Information
Taxon OID3300032011 Open in IMG/M
Scaffold IDGa0315316_10612185 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)909
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001625Metagenome / Metatranscriptome661Y
F017844Metagenome / Metatranscriptome238N

Sequences

Protein IDFamilyRBSSequence
Ga0315316_106121851F001625GAGMALTITTSDWTNANVRKTLSWQAALTSKLRVYAIKVTFGSGDNYATGGVAADLKEGRISTLVAVIPTYTNSKREVVYDKANEKILLYDVGGNATAAFAETPNTSSACASKVFEFLVIGY
Ga0315316_106121852F017844N/ADSIYGIPFIPSKDAPSNASDSSEIGRLFALDTSDAEGYGYPRIGIQIAIPTEYYEATRRSAGYPFINNAFVEKGVFRTMGETVCRHFKSQGKIRDIKL
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