NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315316_10287627

Scaffold Ga0315316_10287627


Overview

Basic Information
Taxon OID3300032011 Open in IMG/M
Scaffold IDGa0315316_10287627 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1377
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057352Metagenome136Y
F059942Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0315316_102876275F059942GGAGVKAGDLISFKPINFGLEDWSNPSIVMSEYESPNEGLWSVWCDGIFCVIDDTNYEILHLTGSLHKAS
Ga0315316_102876277F057352GAGGMKLWVLHGTYENESFTSIHLTEKGCALAAIADIMDFLNVSDEESALQVMNECYAFTETDGEQTEAFEWEHDKLKEMTSKQLWKIFGDWTETCWERMSDRSYYIDATPQ

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