Scaffold Ga0315316

Basic Information
Taxon OID	3300032011 Open in IMG/M
Scaffold ID	Ga0315316_10041235 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032011 Open in IMG/M

Scaffold ID

Ga0315316_10041235 Open in IMG/M

Source Dataset Name

Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3652
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3652

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (83.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.7468	Long. (^o)	-122.0193	Alt. (m)	Depth (m)	60
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

36.7468

Long. (^o)

-122.0193

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F005813	Metagenome / Metatranscriptome	389	Y
F006217	Metagenome	378	Y
F052260	Metagenome / Metatranscriptome	143	N
F053978	Metagenome	140	Y
F103094	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315316_100412351	F006217	AGGA	MIELLLSVIEEPNQFHKYCMEKHEHWTGRAACVQELRHAQRKLEVEELRQFLKENPHYRYPGMALPNGKIKPLDVCWGSDKTYYIGSDKV
Ga0315316_1004123510	F052260	AGGAGG	MFVILATKPLNDGTKGFRFNFLGKKGIVRQRKLKSNGIKFTKGDCMNAYHIGKTTVYTEQSVNKTSARKFCHLAG
Ga0315316_100412352	F103094	GGA	MTKKTPEKLNIEMSISSEHSCYVSVKGYTIYVEVSQATNNKPYISFWKKGWEDDRAVTLS
Ga0315316_100412353	F005813	AGGAG	MKLYKNSNGVWAGTQADARKYCGKDYTTVDVPTDKPNLLGFLNLNQVGSLASSPTLEEVRTGKPNKEAMSWFRWAHDCMLRGQYEDAKEMLRKGLIDDKENT
Ga0315316_100412355	F053978	GGAGG	MHINETTKQMIREIVVELFKEVASKQTFGVSDEVIQLDEHLHDWTGRKIDKYKVKVYGARLEERY
Ga0315316_100412358	F004493	N/A	MQNKIVKNNALDFDDEQWSALIAGNALLITWFVEWIKKVEEGKRLQYYQTLQIQDFFKLKYNQSAGCDPWHMKDSKISLDGKFVSEGDDDLEPYFLINTDDGVGYIYPYAFVALPTKSGGHHIVRMD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315316_10041235

Overview

Ecosystem & Geography

Associated Families

Sequences