NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318563_10015195

Scaffold Ga0318563_10015195


Overview

Basic Information
Taxon OID3300032009 Open in IMG/M
Scaffold IDGa0318563_10015195 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3684
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010323Metagenome / Metatranscriptome305Y
F026464Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0318563_1001519511F010323GAGGMQPTLPKFGNLAPEAQAARLLHCRYLGVVSVHRLATEMGLPVERAELLMCRGLATLIARGYPAEDLCETYHLTPEQLSRAATTPVFSNAFEPLAAGR
Ga0318563_100151958F026464AGGAGGMDQRRTRQIPDDELVEIADQPQLWISKDGYVKTLRAGLVRAAHITGQGSPFPLERPNGTRVELAQMSRLWNRLGIVQEKGSA

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