NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310695_10457375

Scaffold Ga0310695_10457375


Overview

Basic Information
Taxon OID3300032007 Open in IMG/M
Scaffold IDGa0310695_10457375 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_04 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1069
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameCanada: Alberta
CoordinatesLat. (o)49.6935Long. (o)-112.8418Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037487Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0310695_104573751F037487N/ALEHVAQRKILRTSPITLEFLELSRNEFEIYRKTLEAKKFVCKYNMANYMTVKGFLQFDFSPEQTSVPDQYYKKLEATSSIYKNLNNVMGKIVKDLNNLGRHMRQASEAFSALKNYSSDSRQDTTLITCYEKLKGIFNTWSQSYDKQKFFFNNNFREFFDYMNLEIKNLAFINKQFNNIKNDYEMYGLELIQKKEKLFGGTKYSSWELSEDDMKNIEYLKKNKESAFKAMLPGMTNLVMAQKVQLASSCHILKKEYERFMKKQGENLKNYLASLKDKNQEIISDAYALCSLFNIEV
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