Scaffold Ga0310344_10178119

Overview

Basic Information

• Taxon OID: 3300032006
• Scaffold ID: Ga0310344_10178119
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1804
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.7656
  • Long. (^o): -158.2256
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034954	Metagenome	173	Y
F040675	Metagenome	161	Y
F073652	Metagenome	120	Y
F087046	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310344_101781191	F087046	AGGAG	MSNEYEFKVHNFYDYTLEELKQLKNEFEASVSSFESMYEAAVYFKEACADLDKLSKDEWYKKYVSEDGNHWVEDGSIYDIAKEHYKENKXQKKK
Ga0310344_101781192	F073652	N/A	MTKKEIDIDNEIEKRWDDFYEWLHTCPFKWSQSRHSTSGMTAINFDIEEE
Ga0310344_101781194	F034954	AGGA	MNKKLPDIYNIRRTLEDCIEKKLKGNVTDVGTWLDFSGSDIAFELKGKRYNIEINDITND
Ga0310344_101781196	F040675	N/A	MKKYKIRVTGMGLEAVGIIPFQNEPTIEEVEDATALYLNEKLMKVELDENFYAKDRYMLTYEEINXIINNN