Scaffold Ga0310344_10099164

Overview

Basic Information

• Taxon OID: 3300032006
• Scaffold ID: Ga0310344_10099164
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2419
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.7656
  • Long. (^o): -158.2256
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004549	Metagenome / Metatranscriptome	433	Y
F033764	Metagenome	176	Y
F063608	Metagenome	129	Y
F071754	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310344_100991642	F033764	AGGAG	MHIDKYVVNNIGTKWTNGKSKKNQILGTIDGLDIDLKKLSSLLDEWHETVNGEWSSRTIELVINVKEEKNES
Ga0310344_100991645	F071754	AGGA	MYITLPNSPVRKIFKCANCDNYHIKFFDPKHDRTYTPAEWEQIITEGKEALYKALQVVREDPKFFA
Ga0310344_100991647	F063608	GGAGG	MKRKDNLKTRLLKDYVKVSKNALREPKTWREVATRVRWERLRKILWRRYDYMQSL
Ga0310344_100991649	F004549	N/A	VAIDTYKLLKKLAAEDDRSAGMQITYLVKREAKKRKLAA