Scaffold Ga0310344_10020712

Overview

Basic Information

• Taxon OID: 3300032006
• Scaffold ID: Ga0310344_10020712
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5080
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.7656
  • Long. (^o): -158.2256
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026394	Metagenome	198	Y
F075322	Metagenome / Metatranscriptome	119	Y
F101849	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310344_1002071210	F026394	N/A	RSLMFTHCSFMTATQLKPKPTRKVTKMTQSNPVVITKQRDFTHKEPVIIPSHLDEIPVISAASYIKDARNRWYIHTVELKEVWDVHVDLFNKFKPHALNAHEYVVKRYQELTSE
Ga0310344_100207128	F101849	N/A	MPKYHVTLQSGRDFILNHPGDEYDIAYEAYEEACLMDDYLVDIVPISNDKEKTTLLP
Ga0310344_100207129	F075322	N/A	MDNFKKYEFTIKVKTNHDPRQAIFEIVDALKGMLPVLSIEHRLVEDRPTSDEHHGGITDEGDT