NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310344_10017801

Scaffold Ga0310344_10017801


Overview

Basic Information
Taxon OID3300032006 Open in IMG/M
Scaffold IDGa0310344_10017801 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5457
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.7656Long. (o)-158.2256Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007121Metagenome / Metatranscriptome357Y
F011446Metagenome / Metatranscriptome291Y
F021857Metagenome / Metatranscriptome217Y
F025588Metagenome / Metatranscriptome201N
F035477Metagenome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0310344_1001780110F021857GGAGGMTITDNRVNVRSRFCAICDSQFRWQCTCPNNRVMAKQKEQSFKSGKRYKGKKALEYCMQPEEKKDEEL
Ga0310344_100178012F007121N/AMLKTFLLTIILLFATPANADWYIVLENNLQEPGLDKLIEWVPEEVPRTVTFYFDTNGDGKYDIKIAYSLIEAFACDKQRNCVSKITDNGDHWLLPAPGINYYVIKKWIVYRYVDDKEWRGENKTQQWIFEYPLHEDWLKHRFEKLWPKE
Ga0310344_100178016F011446AGGAGMEAMILGWAQTQSWWGIVTTVVVIANGVTMTLRDRYAEQIPILGKIWPILNWLSLNIANNKNDEK
Ga0310344_100178017F025588GAGGMAKTYSQFKKSLMNEDGMMNGDDGLENPATTVHYGPNDPEIDRTASVTMTVPKYRLSESEKGCNHTCSHWRDQTWCNEYKFKCDPDYICDAWNDSGI
Ga0310344_100178019F035477GAGGMKNFKNFTEAKMTRQHFQMIADVISGLDINVSIKKDIAEKFADALSNTNPGFKRDYFIKAAK
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