Scaffold Ga0310344

Basic Information
Taxon OID	3300032006 Open in IMG/M
Scaffold ID	Ga0310344_10016352 Open in IMG/M
Source Dataset Name	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032006 Open in IMG/M

Scaffold ID

Ga0310344_10016352 Open in IMG/M

Source Dataset Name

Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5677
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5677

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (63.64%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location Name	Pacific Ocean: North Pacific Subtropical Gyre
Coordinates	Lat. (^o)	22.7656	Long. (^o)	-158.2256	Alt. (m)	Depth (m)	200
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean: North Pacific Subtropical Gyre

Coordinates

Lat. (^o)

22.7656

Long. (^o)

-158.2256

Alt. (m)

Depth (m)

200

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001066	Metagenome / Metatranscriptome	788	Y
F025142	Metagenome	203	Y
F082802	Metagenome	113	Y
F097509	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310344_100163522	F082802	GAGG	MTQIKDVVKFEDVTKLVTMDEKQVAKINSRLPEYHRASAIVGHSTSQSSYSLQTMQMITDSPLQRMKQCLAQIDKKYKALQEAYFNVEKKKLQIQNLEKRKDKQSMLTVNEYYSQVAGISTSMETTLRQIGMFQDMYDSIKKNNNIPDNWSEKDFEAQEISHMVRSSFRIAIQDLSAGGRVSKAAVEYWEQLGIHPQLAETRTREYLVTIQNKINNSEPITINDMYDFLDKMAEEFKDSYKDALNRIGLDELGSEGFMAEGVTKPQ
Ga0310344_100163525	F025142	AGGAG	MSMDMMPRAIEYKVKAGSRATLQLQITDSTGTAKNLSNDVTYATGKWKVWKPDGTSLINGSITFDTRSTGDISYTLSATDATNAKAGRWEGEVELLDSNGDISEQTESFTFIIDESY
Ga0310344_100163526	F097509	N/A	MLKLEDINNEVYFKFRKAQVEAMETERLGKIHVSDVIKPCDRYTIYGKISPKTMSTEDMKSLYIGQAVHNNSKLATDENHEKFLAWDWVEDKPLTYEEAKKIPEGDPKHLDIIYGSIDDLLKVGDKWIITDKKTTGSIGYFSKASSKPSDSHKDQINRYRVLLHKCYGINADFGCVIYISNSISKEVRDKPACLSFKLQPYEEIVEDMKQKAAIIKDALLNKTLPKRTKCFLCDGMCPYATKCFTDDRKFWDEE
Ga0310344_100163529	F001066	N/A	MADDLFKIKPVGKTNIVVEDKRKTISKFNAAKHFKTANIPALCDQCVYRSIEDGGNGKCPKYEAGAVCAIREDFVKFINEIDTRNPEDLKAMMDMLAKLSFENVLMALTQSKLDGNIPDRNTKSEINTLLNVVKSINDLNSKIVVTEKAEYTKEGDIANIFRQIKAQKSE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310344_10016352

Overview

Ecosystem & Geography

Associated Families

Sequences