NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310344_10015719

Scaffold Ga0310344_10015719


Overview

Basic Information
Taxon OID3300032006 Open in IMG/M
Scaffold IDGa0310344_10015719 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5780
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.7656Long. (o)-158.2256Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002078Metagenome / Metatranscriptome596Y
F013820Metagenome / Metatranscriptome268Y
F022754Metagenome / Metatranscriptome213Y
F036736Metagenome / Metatranscriptome169Y
F048916Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0310344_1001571910F048916GGAMGILSELAAPVANFGLGLYNADTYYSKECAWYEEVKLTQSTKQWLTDSKPPEGVVKDLAKVARNNDIYKEVCDPKDDKEKN
Ga0310344_100157196F036736GGAGMDKLNEMLIGALAVVGGFVTKRVFNNHDSLSNRISALEKTVVTKEDLIHIERNVEMILTHLINKGDTP
Ga0310344_100157197F013820AGGAGMIAAIIGFIDKAMPGQKTYALMLIGIGMMVCQMLGYHQFPNEAWGLVGIGGAATWKMGHDRKKK
Ga0310344_100157198F022754N/AMFVIPPPYKMVNWTVNQVPTQIQLIHKSGLEVSYNASPVSCSFRPRNNREMVFKSSETACYAVYDLGNPTFIRHPDHWYPVEPPKPLKMNIGE
Ga0310344_100157199F002078AGGAGMDIASMFEGQGWFEIAGQVVLIFTAITGALPDKFVQKIPVLSTVWPIFNWLAGNVFNNINHPKGMAASADVEKEIDEAKAKVRARSGMPDVLDGM
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