Scaffold Ga0310344_10005284

Overview

Basic Information

• Taxon OID: 3300032006
• Scaffold ID: Ga0310344_10005284
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9596
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.7656
  • Long. (^o): -158.2256
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001625	Metagenome / Metatranscriptome	661	Y
F031648	Metagenome	182	Y
F034597	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310344_1000528410	F031648	GAG	MVELNHNVVSFNADTTIKGDHGVVVNVYVSKTGSSGSKCVFKNGGSSGTEEFTIFSENQGTYVGINRRFEDGIYADITGNAEYTVVFK
Ga0310344_1000528411	F001625	N/A	MAITISTSDWTKANVRKTLSWQAALTSKLRVYAVKVTFGSGDNYATGGVAADLKEGRISTLVAVIPTYSTCLQEVRYDKANEKIQLYNVGGGAEAKFVEVTNTSSTCASKTFEFLVIGY
Ga0310344_100052845	F034597	N/A	MAIKTFNVDIEGTSQTIEYEDDITFGELENILNKCLDLSDVQKPKVNIPLYRQLILTTVIKKAPFDIGDLSAIRNLKASTAKKIMEEVMKDYPLAKYLEEWVETFVGKVEETSTLNRSITSAQESSVGQRNR