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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032006 Open in IMG/M |
| Scaffold ID | Ga0310344_10000875 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 23510 |
| Total Scaffold Genes | 35 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (42.86%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean: North Pacific Subtropical Gyre | |||||||
| Coordinates | Lat. (o) | 22.7656 | Long. (o) | -158.2256 | Alt. (m) | Depth (m) | 200 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001066 | Metagenome / Metatranscriptome | 788 | Y |
| F040325 | Metagenome / Metatranscriptome | 162 | Y |
| F074009 | Metagenome | 120 | N |
| F098028 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310344_1000087520 | F074009 | GAG | MGTKIKGKYAGNCKICGNEWEVGDDIFYQKEPKAICVNKTCFEEQGGKFTPFKSGQTTFTGGWNKTPIVTKLPEDVTVSDEVKKITEYWDQFFLVAHHKTKAVYPEEDVNGDRFGQIRSKMMDQLMSLIQMVKQ |
| Ga0310344_1000087522 | F040325 | N/A | MARRKIGNSHTTICVTWEDKELFRKFAKFVKKTKTGDLYESDAVLFHKLLVEFKKDNVESERPNTTYPTRT |
| Ga0310344_1000087528 | F098028 | GGA | MFGWLKRENFVLPPEEYQRKLVSEIEEKLKDSKGSEKTRLTYMLANQLMILNQIINKKKPKKPIRLNNKGKWVWVEDGS |
| Ga0310344_1000087529 | F001066 | N/A | MKNFNNEGNNCYIMDKKEDLFKIKPVGNKNIVVEDKRKTVSPFNSTKHFKAANIPALCDQCVYRSIEDGGNGKCPKYEAGAVCAIREDFLKFINELDTRNPEDLKAMIDMIAKISFENVLMALTQAKMDGNIPDRNTKSEIKTLLDIVKSINDLNSKIVVSEKQEYDKEGDIANIFRQIKAQGSGD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |