Scaffold Ga0310344_10000201

Overview

Basic Information

• Taxon OID: 3300032006
• Scaffold ID: Ga0310344_10000201
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50172
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (65.82%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.7656
  • Long. (^o): -158.2256
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F001625	Metagenome / Metatranscriptome	661	Y
F031648	Metagenome	182	Y
F056888	Metagenome / Metatranscriptome	137	N
F064801	Metagenome / Metatranscriptome	128	Y
F101853	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310344_100002015	F056888	N/A	MHVSKVLDIDGSFQQSTALVAGEKIVIQGFNVKDAPSVGAKVVEITTTDGLRHSFGKTIIGQANSDYWKDAVAKCVKADANDGLDCWIEEREAEGTGRMMLALSMFNHGAKTQD
Ga0310344_1000020153	F064801	GGA	MGFTDSIRKVFGRQDVTKGYTENTTRPSIAQPYMSTDTGAKLPIFPFPLIMIYELADNIDALRIPIETLNREMFKNGFEVVEKYKYKCANCSKEFQYEPTVGDKPDDQPFASNQDNEANYIPKRKALVNKQTEQANLQCDTCGSTELLRPQPEHRKKLEDLLANPINGNDQNLEDVSRQLERDLEIADNAYLLCLKNYYIDDTTNRINHDRTEIKEFLRIDPPQVAMIADSDGRVGYDDKRNQIFVCPRFEHRDKRLSEPVCERCGAEALKAVCEVNSVYSIGIPQPKRVIYGEGEVIWKAGKYKPSLIYGYSPIYSVWSKAMSLSHMDEYIRKYFDKMRPPRGLLVIASRNYETFRKSMDVLEQKAQEDPYMIHPLLVESDKGNKNMAQWLDFTGSLKELEFINIRKELRMIIGAVYGVLPLYFGELPSGWSQEGLQVTITNRAVKWGQDILMKAFFRKIAQMLNIEDWELRLKTGEETDKLRDLQIEGVEIQNMQAMQAMGFDITRTHTGEFKVSKDTAFNAADMIGMDAQQKQGRGRGTAAPDEDTQDFEGQPSRRRPSDVGGVGQGHPSSGSGTSLSQKAYPDGITPDNYNVVKNVLQTSVDFGWTKSKTIAQLRKDAHMTVRSARDLVKQEFDSMRRWEDENKEN
Ga0310344_1000020155	F001235	AGG	MATKLPVDTGGTYVGKKLWEKHQKDEYTRVSNYKEAVCLNCLKVDATSATIADICGDCAGKRGREPLLAKVSEKMYGLCFFCGEYKFHIEQINGRFCNPCHRRIADVTKKYNKDGGMFGADPFWKSMKRKLGKDWAILMKTPQSHRK
Ga0310344_1000020158	F101853	AGTAG	MSIIKPIARIGGNFGISFFSPLVGGNAAESIYDIGLSFEAMVVIAFISATFITGLSISREAHEWGKNGGKKRK
Ga0310344_1000020163	F001625	N/A	MALTISSSDWTNANVRKTLSFQAALVSKLRIYSVKVTFGGSDNYATNGVSADLKEGRISTLVAVIPTFTDSLHKVEYDKANEKIKLYTVGGSAGAAFAELANSSTTTQSKVFEFLVIGY
Ga0310344_1000020164	F031648	N/A	MVELNHNAVSFNTDLAIKASHGVVVAVFCTKKGSSGAKLVLKNGGASGATEFTIFGEIEGNYQNIHRRFEDGIYADVTGSAEWTVIFK