Scaffold Ga0307416_100146915

Overview

Basic Information

• Taxon OID: 3300032002
• Scaffold ID: Ga0307416_100146915
• Source Dataset Name: Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2154
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.5
  • Long. (^o): -121.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016872	Metagenome / Metatranscriptome	244	Y
F018165	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307416_1001469153	F016872	AGGAGG	MHNDQTAQDARMLLVAFSTNHPEARTVSPFGLDRPFSPSWADAEQAGLNRVRRDTAMWWLVENNMLERDEETENLLGKGEGLPDSDYGSVFRITDSGRELLEEA
Ga0307416_1001469154	F018165	AGGAG	VSDDRSVGEMANEVLMRQAKARAEKTGEPIEVALEAVLNTEAGAQLRELRDVAHSEESVEEWQVGMARERAQERAEDLGEQLGEPPELPTHG