Scaffold Ga0307416_100139605

Overview

Basic Information

• Taxon OID: 3300032002
• Scaffold ID: Ga0307416_100139605
• Source Dataset Name: Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2200
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.5
  • Long. (^o): -121.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016368	Metagenome / Metatranscriptome	247	Y
F021723	Metagenome / Metatranscriptome	217	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307416_1001396052	F016368	GGAGG	MSGLVVLKAHKVNKILPPGYHVDHDPDVAILRRPDGSVVSYFPIWSMNPERILREAELDLASAHLANS
Ga0307416_1001396053	F021723	GGA	VPDADELKLLASRQEQRFHEKFGYPASEVPGIWVGQYVAVNMLGGRGKDRQLAPTRASGMLEAISLDGVVLSVEERVVFIPRESVLQIELYETRGRGSRLRLEQ