NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306922_10265475

Scaffold Ga0306922_10265475


Overview

Basic Information
Taxon OID3300032001 Open in IMG/M
Scaffold IDGa0306922_10265475 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1845
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005858Metagenome / Metatranscriptome388Y
F008319Metagenome / Metatranscriptome335Y

Sequences

Protein IDFamilyRBSSequence
Ga0306922_102654752F008319GAGVSIIQFRRAKLLQDAKLSGVTVADIARAMANMDGVQALSRFDEGFTSAYLNKAEALLNLAIECALERRCDRIATRADNK
Ga0306922_102654753F005858GGAGMSHQYKAGDVVTVFRISSSKELVIEGKATIRKRVADIDEQYRVEFANKPGVTCERFVDSWGQDDPEKYVQDFNRRSAR

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