Scaffold Ga0306922_10135422

Overview

Basic Information

• Taxon OID: 3300032001
• Scaffold ID: Ga0306922_10135422
• Source Dataset Name: Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2627
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006212	Metagenome / Metatranscriptome	378	Y
F010089	Metagenome / Metatranscriptome	308	Y
F072157	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306922_101354223	F010089	N/A	VSQKLSTIFRDFLRALRQLWLEFIGAIFLALGIVFILAAVQEYRRYVRAPGIGSGRFVMVLVSSGVMIFFALESFWKSRKSR
Ga0306922_101354225	F006212	AGGAG	MRHLTVENIITYMDGQGSDVEKSTLETHLAGCKECSELKQEFQTLMFQLREDSSFEPPAEVVEWGVNLFQPVMKPEKGGIRKIVASLIFDTFDQPLLAGVRRVGAPPRQLLFRAGDVDVDVKIESMEANDRITLVGQVLSSATKFFDNTPVKLESHGIVRYRTRTNVVGEFSFDEVPKDTYHLSVDLPEGQITLFCVHRGNS
Ga0306922_101354226	F072157	AGGA	VTVPNPEESLAALAQIRDAAQQRAYISNTRGLPTPALIESISTRIRELLPRDPDLAQILAETNLYIASLVDTTVGWAFANRSRAQVLYTMRKSTDAEPFFDRAVELFEK