NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310903_10052894

Scaffold Ga0310903_10052894


Overview

Basic Information
Taxon OID3300032000 Open in IMG/M
Scaffold IDGa0310903_10052894 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1568
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027434Metagenome194N
F050434Metagenome145N

Sequences

Protein IDFamilyRBSSequence
Ga0310903_100528943F027434N/AMEGVAAPFSDEGESVVYTRFYAEAQSALTEHLIGLNEGQSVSDSLIDEIIACAFSGLYNNLLLEADDQ
Ga0310903_100528945F050434N/AELKEAGFPQAIHYNSGGVADYLETDANGKTHIVSVPTLEELLETCGAAFQSVGRVSYAPFLARGQILQAAGQTPIEAVARLWLALQAAKPK

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