NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315274_10458458

Scaffold Ga0315274_10458458


Overview

Basic Information
Taxon OID3300031999 Open in IMG/M
Scaffold IDGa0315274_10458458 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1457
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5119Long. (o)-110.3577Alt. (m)Depth (m)80
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034147Metagenome / Metatranscriptome175Y
F059884Metagenome / Metatranscriptome133Y
F088879Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0315274_104584581F088879N/ADTELPNDIEPAYYLTSRAYVLITDQNEAETTNNDCSIRQNATFQISIVTKFPQGNGGKKLSENISNAIQQKMTLDYLTLPGDLQAINIRKNFSRTQIEQGSSQIAYQKILSYTLDIFQVS
Ga0315274_104584583F034147N/AMAKYHSAPFKEGEIFFYPNLGSLANFEDFTGLGIAEAFSGNSIPKLDYIYALLHECHKVACLRKSTNPVGLDEMKVWIEGKDVMKLFNDVLADLLLELGLGESQEKKT
Ga0315274_104584584F059884N/AMLLIGRTKVPYEQLFYLSRKELQALVKGHEIDQKDMVEAMRTHAIIGLQPHLKKGANLDIKKLWPLPWDNFGKPLETTPQDFAKAK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.