Scaffold Ga0315274_10433267

Overview

Basic Information

• Taxon OID: 3300031999
• Scaffold ID: Ga0315274_10433267
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1512
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5119
  • Long. (^o): -110.3577
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018714	Metagenome	233	Y
F047054	Metagenome / Metatranscriptome	150	N
F058143	Metagenome / Metatranscriptome	135	N
F093863	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315274_104332672	F018714	GAGG	MTDFEYHKTLVIGVIIGASITILAFYMLKPENPPVTPKTNFAVVDTYKDRCDIVQWSDNQMATYKYFLDCSK
Ga0315274_104332673	F058143	N/A	MILERTADLQILKDDTETYYRISYNDEFQYVSWFRREYSILYPVDTALYDILTQKYFEVSND
Ga0315274_104332674	F093863	GAGG	MTNLINKLLAKFNLKLVYIKQKPDVSLVEASVKFLNENPKFVSVQVKPNDFYWGDINYVQKRVDGEFPQVSGETYYKSQPSQYEKYFCDYNADEKILSKEDLKKIYDETTFTTEQLKNKL
Ga0315274_104332675	F047054	GGAG	MRSGTNLMTKDTHSQDLIDDSIKSTLRPRMKDRTKVISAALQYVLNHDLVNRKYLEKIVQELEEMNE