Scaffold Ga0315274_10424383

Overview

Basic Information

• Taxon OID: 3300031999
• Scaffold ID: Ga0315274_10424383
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1532
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5119
  • Long. (^o): -110.3577
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001897	Metagenome / Metatranscriptome	620	Y
F009883	Metagenome / Metatranscriptome	311	Y
F086582	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315274_104243832	F009883	GGAG	MNEISIVIFMVIAGFLWAVMAYAVGFKEGQRQGYTRGRAVSRHISQLDKAVK
Ga0315274_104243833	F001897	N/A	MATFMDGYEGNKERTDRWIKTYPEGRLEATIVNFDPDKGSILVRAAAWRNQTETEPAGIDFAFGYQAAYNANMKRWFVEDTVTSALMRVMALVMGNTEKATKEVMASIKTETPAADYDYWTTKHGDVPSYQTSAEAQESGTPSFGSSEDAWVPNAVPSCSHGSMRWNQSKPDAAKSWGGYFCSEKVKAMQCTPRWYVLRSTGNWEPQV
Ga0315274_104243835	F086582	N/A	MIDRIEEVQCMIAAIQHCHDKSADHSSRIVKDISWFAYVAQMGESMAAEMVVAKRLGYDYTPG