Scaffold Ga0315274_10421241

Overview

Basic Information

• Taxon OID: 3300031999
• Scaffold ID: Ga0315274_10421241
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1539
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5119
  • Long. (^o): -110.3577
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009945	Metagenome	310	Y
F026794	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315274_104212411	F009945	GAGG	MSTALATFKRAHGVATHRKTGAGHRYAWMAFFSTITMNDGTRRAFTELAHEYSMADLMRRNKVADADTELEACQFLAERNGIPWPADEPKKRKSK
Ga0315274_104212413	F026794	GGAGG	MMHSGNNPGSISERDLRVTASQLRADENDAREATRDEVTFDELDRRYADPISREELTALLPFIIAFCEGRTVWAYELKERHGRPMPAWTPITEWDAHYKPQCLSLTYRTDNPFATE