Scaffold Ga0315274_10293478

Overview

Basic Information

• Taxon OID: 3300031999
• Scaffold ID: Ga0315274_10293478
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1946
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5119
  • Long. (^o): -110.3577
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F001897	Metagenome / Metatranscriptome	620	Y
F002433	Metagenome / Metatranscriptome	559	Y
F038208	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315274_102934783	F002433	N/A	MSLGEWMAVGGFVIVLLTAIFSSMRFMVKSIMRELLPNGGNSMRDQISRIESRLDQLLLEIALKK
Ga0315274_102934785	F001897	AGGCGG	MAFMDNYEGNKERTDRWIATYPQGRLETHIIEFNAEKGYVLVQAKAWRNQTEIDPAGIDYAHGFLAAYSDKMRRWMVEDTCTSALMRVMALVMGGTEKATKEVMASVKTETPAADHDYWTTKFGEVPSYKTREEAEQADETGWAVNGVPMCAHGSMRWNQSKPDAPKAWAGYFCSEKIKEKQCKPQWHVLTSDGTFKPQV
Ga0315274_102934786	F000403	AGG	MSGPIEIINPRTMTCTLMEDGVIIAEYKVEQCDKCSRLVKFDNFGYQKGYDRIENIIWFCGDCR
Ga0315274_102934787	F038208	GGAG	MIDRIEEVQCMIAAISHCHDRSGDHSTRIVKNLSWFEYVAQMGESMLAEMVVAKRLGYDYQPGITWDKSKADVGEHIEVKWSANPNSNLWIQESDREDRDIAVLVTGNTPKMNIVGWMPV