Scaffold Ga0315274_10250811

Overview

Basic Information

• Taxon OID: 3300031999
• Scaffold ID: Ga0315274_10250811
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2151
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5119
  • Long. (^o): -110.3577
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034068	Metagenome / Metatranscriptome	175	Y
F056318	Metagenome	137	Y
F097311	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315274_102508113	F034068	AGGAG	MQIKTIKRQRNEPDYERLYQAYEGLIEWIGKNEVDGQETLGLLVKAAVALAVRNNLPKDDIIEVVSVTYEMERSMRPRADEVH
Ga0315274_102508114	F056318	GGAG	MFKHITTYPWSVSRLTVWGYEGDYGIPMVADCYSKNTPVATMRANARLIAIAPQMYEIIQKMQSEDAKALVRYMEKEIENADQDH
Ga0315274_102508116	F097311	AGGAGG	MDDKERIIYLTAALKNLTLSADRYIDDGSWIEHLSLDVEFAKGVLKATKYSKDERSIRDAVGRSIKGEKQ