Scaffold Ga0315274_10215640

Overview

Basic Information

• Taxon OID: 3300031999
• Scaffold ID: Ga0315274_10215640
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2363
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5119
  • Long. (^o): -110.3577
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021092	Metagenome / Metatranscriptome	220	N
F023325	Metagenome / Metatranscriptome	210	N
F052474	Metagenome / Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315274_102156403	F023325	N/A	MRLVSPLIEYLFASKKMKQVGSYEGSYTKSVYMPFTSNALIGTSYYMAPDPILNSVNNEITAIELVDSVTNATAPTVPATDPLSTGQAAQGYFYFCNMKREVVAYIPLYSLIRRLNAGKVQFCNFDDTIVWQNCFVQFDSLATAITTANSVWLRVTYSPIEN
Ga0315274_102156404	F021092	N/A	MTDPHYILEFMQDNDLRYFQIANTHNRDVVTSFNDRSLEEGVDKMKKFLTKNTGFHRIKLFTNNEIRANGIPKQEPQIFEVSITGKEFDPVKEEKEITGFGNPYPSAGGIIGVEQYLSKHEENATLREKIKGLELELQYLREQNQREIDRLRSDHEVAIKAAKDSNQMFSQGLGMLMNRMGVGE
Ga0315274_102156405	F052474	N/A	MSDKEKILTAINKLSKLDANLAENLTKLAELAEKKQFIYQQAIKQLNSL