Scaffold Ga0315274_10212860

Overview

Basic Information

• Taxon OID: 3300031999
• Scaffold ID: Ga0315274_10212860
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2382
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5119
  • Long. (^o): -110.3577
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F003658	Metagenome	474	Y
F005558	Metagenome	396	Y
F031792	Metagenome	181	Y
F046323	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315274_1021286010	F001507	N/A	PYTVEQLLNEIYEDNYSHLEFEWSMGGKPCECKICQTMQTIIKYRGE
Ga0315274_102128602	F003658	N/A	VLDLTGKPILTCICGCKMFVITVMWDDETREVSWYDLRQVCKECGAISTAPTPMDWRDE
Ga0315274_102128605	F046323	AGAAGG	VTQHFEVVYETKGVKVVNVWLAPNQELPEQWNTMTYVEQDEWLYEHQVHSNIKWQDEYKGEAVNVLPVAQLKAVM
Ga0315274_102128606	F031792	AGGAGG	MSEPELNDPWFYKEEEEQMFSCFICSEPLDRDDIVWADVEGQILKEGNDCSWCVSCLPAEKGATE
Ga0315274_102128608	F005558	GGAGG	MDEQLSWSELAELTHQTQVARFNWCWCEDNEGNENPYDDCPKTGA