Scaffold Ga0315274_10189265

Overview

Basic Information

• Taxon OID: 3300031999
• Scaffold ID: Ga0315274_10189265
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2564
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales → Pseudomonadales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5119
  • Long. (^o): -110.3577
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066572	Metagenome	126	N
F086810	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315274_101892651	F066572	N/A	SCIRQHRLARDFKPDISAIHKAYCALIPQNLVGEREVEQTRNDLQRCTPISPEEFAAWDVWAEAMLKNVTNEELKRVNDFIGHVPESRRILAVAVEHVRKPSVRYA
Ga0315274_101892653	F086810	GGA	MMYPTTRNKAKILRAAMYLRHEGFTVGQTKTGFVAVDDDGIVIQATPYRTSAQIFHPTLKIYREEYALSLQEIYWFTEKLSLLTEWAKDLNAKEPGRVLSMSRRPVPSRQKTA