Scaffold Ga0315274

Basic Information
Taxon OID	3300031999 Open in IMG/M
Scaffold ID	Ga0315274_10188852 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031999 Open in IMG/M

Scaffold ID

Ga0315274_10188852 Open in IMG/M

Source Dataset Name

Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2568
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2568

Total Scaffold Genes

3 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5119	Long. (^o)	-110.3577	Alt. (m)	Depth (m)	80
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5119

Long. (^o)

-110.3577

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F037652	Metagenome / Metatranscriptome	167	N
F064316	Metagenome	128	N
F080330	Metagenome	115	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0315274_101888521	F064316	N/A	MLGDTKEEAALEVNDPKAMRPAKKVGALKMLLRQFEATGNPPLQGAEVLPPKLIGDGNYHWHPLAWLRWLAQWERVKTFALFIILIGLLVVYWVISQRRSYEVKLPEPATELLLKSKGFDAFNQNQVEAFLTFVVNAANEASSEGMPLLNLLEGSVEPAIYLRLQQKGLKMANVPLTDYPIYTLYITEVTRWRYNPATRIISACAKGFRMTNTLSGSGGLEPYRAQIEIFWEPMSNRNKWGYYLQRFDEFYGAAAEAYDAELKNRDRSGF
Ga0315274_101888522	F037652	GGA	MAPTPYPHFWSEEPDARHRGWRPTDEVRRRLIRWWVAQGLLLAAIVIVGILAAKESKRMPPIYARLPNGVVFETSAGPLQLDRVARVELVNDVLQILYYQEGNLNYLDSVKENVKPQLLAQFRAEMESAAKQTNSTVYLNVAETFEVVHVPAKGFEAVTKANLIKRSNQESAGAPIYIRTRWLLEGSGYRLARVEEIKPGDYYELFLAEKGRLKKLSKQELERELAVRKNQEIPLPKRNPLF
Ga0315274_101888523	F080330	AGGA	LLAGDPFTGNSANPYPGTLADGVRLSTRVVENVYLMPEQITKLIFPKPVDEVSVNTQVINIGRNPADSKEYYLLLSPKVANADVNMHLVVDGKTYSFRLIVGKEKVNYRKTYTVEGGGSSRSLSKVPPLAPTEINTTRLINLISQIGRDPNYANIAAKDIGFSPQGVTYLWNGAEVTLQAAWHYYPQDVVILQIEMHNPTSQAVYLSASQIEPFIANTEFPYLLTQQGTKVLLPGQTDLKYIFLQGNAIDIEAARFELRLPASKTQLKEIPAP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315274_10188852

Overview

Ecosystem & Geography

Associated Families

Sequences