Scaffold Ga0315274_10063731

Overview

Basic Information

• Taxon OID: 3300031999
• Scaffold ID: Ga0315274_10063731
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4906
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5119
  • Long. (^o): -110.3577
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001515	Metagenome / Metatranscriptome	679	Y
F003658	Metagenome	474	Y
F008237	Metagenome	336	Y
F015702	Metagenome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315274_1006373113	F015702	N/A	EIELDYTVNNLVRLAKDKWGDNATEYLAGRLESVITYAQMKALIDGLTKEKG
Ga0315274_100637315	F001515	AGG	VATKSSFDLDFGYGRKGEQLVDELLTGGRTVEVKRDRKWFKTNNLYIETECFFQKAGDWAASGLGVTEAAYWAFVLQESTLIVPTDVLRYAVKEFGREISCFIPPNQSKGFLITVDDLMTATRKYKEDDRVE
Ga0315274_100637316	F008237	AGGA	MIEWNRIERWQYIVDAVASDYHRKFSPIEFDDIQQSLYQWFVEHPNKLDTWEAIGNKDAKNLIYRSLRNQALDYCQHWKAKSGGYEASDLFYYEADMVEAILPAVLRGEFGLGAKVDLGRPGRPSAPNEGGNMMAMMIEVDYGFWKLSKDDRKVLFLRHAESMDFGAIAGELKLGSEDAARMRHKRAIRKLINKIGGFRPFRDEDDTPAQEEEDK
Ga0315274_100637319	F003658	N/A	MFDLQGEPTFACICGCLMFEVTVMWDMEDRTVGWYDLKQRCKECGSLSTAPTPIDGDDDAYL