Scaffold Ga0315274_10056977

Overview

Basic Information

• Taxon OID: 3300031999
• Scaffold ID: Ga0315274_10056977
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5232
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5119
  • Long. (^o): -110.3577
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019614	Metagenome / Metatranscriptome	228	N
F071981	Metagenome	121	N
F071998	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315274_100569771	F071981	N/A	MKIVIKFDTDSAAFDANQYGEVDRILQQVGSYAYEYMLHPNYQLDRNNDKGHKIVDTNGNTIGKFKIKL
Ga0315274_1005697712	F071998	AGGA	MNASLLVTTAISKFPMAKRIAVENFTSGYDYLNMEASMNLSADTACYKWNVHTVKAIKYVLNNKPKNTR
Ga0315274_100569773	F019614	N/A	MLEVSTWWVYSIYTMNVASIASNKIQVEYSAMPGDNREFLTFKVPNGWDDVKRLTNKVLTHNSKDFTFSGWNSDRNECYFVRLVNGPSFVASIR