Scaffold Ga0315274_10043410

Overview

Basic Information

• Taxon OID: 3300031999
• Scaffold ID: Ga0315274_10043410
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6110
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5119
  • Long. (^o): -110.3577
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002259	Metagenome / Metatranscriptome	577	Y
F006697	Metagenome / Metatranscriptome	366	Y
F011474	Metagenome / Metatranscriptome	290	N
F051646	Metagenome	143	Y
F070805	Metagenome	122	N
F079602	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315274_100434101	F079602	N/A	MGFFNLQMGHYNKISIHTRDFAQLADVFEQITLFLKNNSGKLDQVVTKELDTYTTHHLKNLLNTNEQP
Ga0315274_1004341010	F051646	N/A	MVGLFYIYLPMSWQIPTQVEQDIIAGKAKYQTFQTGNGGQSILQVPPNSFVVIFGYDFSPAGGGWRVADTATAQNQLTPSDLRFFETQQISFYTGTDFFPFIHHVNTEHSVFRSDASLATGEYYTIDSTPIARQVYITSTNDVTITHGLIQTATPATTGAIPVTSRTPGFLTYGGSGQLIQAQTNYGPGATPLQFMQPSPKDFQDFGLGLLPGNPDNQAFATPDATNGLIEANVHLASIAADFPRNAATNYYLCLHYAIYSKTIPEQRG
Ga0315274_1004341012	F011474	GGA	MKEKIDHLTHFDIVVKEELASCTSADEMLHVLAKNYDLRKTLGGITKAAFTIGLRTAVGMLRPEVKANFNYKAKELKETRFPHLK
Ga0315274_100434103	F070805	N/A	MYLQLAGHTPLHNAENPLAPGATPYSYDAMYLGQGQDIILPDALYKTSPGGFVDALKKLKKLYEDFQDGKKPTPAVVAARAATAQMPSGGVQPASPIQPMNGISATIALLSQAIPFIISILGTISATLVNNNITNKYNQNAYNVQGLNTMNLSQLNLQIQRLDQDIAASGGITKIINLMALSQFRMVYQQRFDRISGFGLLSNLPGWVLPAALGLGAYLLLRRK
Ga0315274_100434107	F002259	N/A	MGMSAQDKMLNVASRLGLTTLKDMQGTTRMVYDSQTTAALTHTFFKGASQRAFPLSNVGANGNQFQVNEALLVEKIGFFVPSAANGIAYGGLAQISVKFDLVIGNKTVLKDVSCEFGGEQAFYNDGAVGSAVIDLEGVGILIPPQVEYYVIAKSFISTDRTAFSTRLGCYLFGTGALLNFNTTI
Ga0315274_100434108	F006697	N/A	MANQVSKLAYVDSKLGVSLPGQQTTRVIYDSVNATAGQQFFQFFTNFAGKTEFQTNLTTNKLDSGESMVIKSVQIIMNSVTSNLADHLNLNITVGNQVVLKDFDPSFNASNRGLAFDRLHSGFNDTNNLEVRLMTEIVIPPQVNFKAELQISNALLALNDDVTIIFKGYGRIFSAGNSF
Ga0315274_100434109	F000710	N/A	MASNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGILLSSTTSAAPATLVNATQLRVTLTINNDVVIDDVIAHELGASVNGGVTTGFPAFVPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI