Scaffold Ga0315274_10010872

Overview

Basic Information

• Taxon OID: 3300031999
• Scaffold ID: Ga0315274_10010872
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13086
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5119
  • Long. (^o): -110.3577
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016273	Metagenome / Metatranscriptome	248	Y
F018369	Metagenome	235	Y
F046382	Metagenome	151	Y
F058152	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315274_1001087212	F058152	GAG	MIDYFESLIKLTAMMHQYQKLVLQGKYDAAADVAVDMQIVLVDLQQWTEAQVDQSAT
Ga0315274_1001087222	F046382	AGGAGG	MNKHNWPFLTDLGDPNWTGRTTRTMRCQTRYTRADERIPPIAWVVGLLMLALVFGFFPFLSLVML
Ga0315274_1001087223	F018369	GGAG	MKYAYTQLTDAGKRQLMRDLSHELSDRKIAELMDQFADGVKTDSNGEPYIKIDRDEVLMCAVPMYTHFIDINHIETVTANEEDGSDE
Ga0315274_1001087227	F016273	GGA	MTQSEEAILISWRLQQWYEGMVLDARAMQDLQDAIEMLKTLAKVQK