Scaffold Ga0315274_10006845

Overview

Basic Information

• Taxon OID: 3300031999
• Scaffold ID: Ga0315274_10006845
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16571
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (13.79%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5119
  • Long. (^o): -110.3577
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012010	Metagenome / Metatranscriptome	284	Y
F057296	Metagenome / Metatranscriptome	136	Y
F069688	Metagenome / Metatranscriptome	123	Y
F083779	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315274_1000684516	F069688	N/A	MEKVNNIFTVDTVTIDGSYIKLTGVYQIPESSPFERGDILTEDKYNGHQIYVSFGTKDKDGKDGLILDTRSMHPAIKKSLDTVTLGLNLFKIED
Ga0315274_1000684518	F083779	N/A	MAKMIFNKEETKNLIMMLKSEDADNHIIAFETLKNVDFKKYTGELLVLYKFGGHTMENWMLNCKKIATKLLDIKPETPLSSPKTLSLITKNKGSKASVELFMEFFIRDMTRMLESIGYPTDQFEIHIKLKDDGQTAKS
Ga0315274_100068452	F012010	N/A	MQEIFNKLIKEDLSPNTYYILHCIKEKIVPNNFVNPGIESKRLQNNEWLNEDLQLTNKSIIFIEEINSFFKKSKNTTSKNLMGDEFLIKIQEYVEIFPNKKLSSGKYARVNIKSLEGPFRWFFETYNYSWETILVATEKYVTEYSLKNYEFMRTAQYFIRKQESDKNFISDLATYCEFISTGGDAETFYFKENIV
Ga0315274_1000684529	F057296	GAG	MMLLQASWQDQQTFRMIPVTENCPYVECIFDPSTKVFVVISKIKKTTLHMLPKLDEYGQAVTGVKGTKQERHKLEVFQ